fabsh wrote:- when you select "submit package statistics" in the installer, that does seem to get overwritten again later (dunno if this is an Ubuntu bug or if it's #! specific)
Not sure about this one, first time anyone has mentioned it. I will look into it.
fabsh wrote:- do we have some kind of update manager at all or do I need to use aptitude?
Ubuntu's update manager does not work too well at the moment with CrunchBang. I think it is something that can be fixed, again I will need to look into it. If I remember correctly, originally CrunchBang did ship with the update manager, but there were issues with not having any of the major desktop meta-packages installed?! Current workaround:
sudo apt-get update && sudo apt-get upgrade

fabsh wrote:- why do we have a Desktop folder in the home directory if we have no desktop manager anyway?
This one is more annoying than anything else. I think I maybe able to fix this as I am sure there is a standards file somewhere which defines folders. Whether Thunar, or any other app for that matter, respects this is another thing entirely. You can try deleting the folder, but it will probably appear again at some point when an application tries to access it. Personally, I live it, but it would be nice to fix, if for no other reason than I do not like directories beginning with an uppercase letter 
Good call on all of the above, needs work. Thanks.